PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04305.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 879aa    MW: 97855.2 Da    PI: 9.1813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04305.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-094686345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W+++E   +++a +q+G++ Wk+I+  +g g++  +++s + 
   Pahal.E04305.1 46 KWSKDELTHFYEAYRQHGKD-WKKISLAVG-GKSSDMVRSLYS 86
                     8*****************99.*********.*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7574299IPR017884SANT domain
SMARTSM007170.00534391IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-94489IPR009057Homeodomain-like
CDDcd001675.00E-54683No hitNo description
PfamPF002494.7E-84685IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-44685IPR009057Homeodomain-like
SMARTSM011354.0E-38506607IPR033471DIRP domain
PfamPF065844.2E-31506606IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MAPAKGSRTI NKTIIKGYED QQQYDDPPSS SKAKQKKRKI SDLDPKWSKD ELTHFYEAYR  60
QHGKDWKKIS LAVGGKSSDM VRSLYSVHRT FLSLPERQAT AMGFIALVTG HHNASEKSTS  120
HIGDYQMVRA SGKARRRGEA TQQKATERPD LHDHHEGTIS GFSSSFKKRY YGDFVRNSRN  180
HAVRRRTPRI PVIAPAVRNT IDEASPGIEN IINTTKRKYE AANKDCAIVP TNKCSPDRSS  240
GINETNKAGQ DHTFLDTKAT GDTAICQKQL KKTRIQQPTE DGQTGKVEHE TVMASDEGNK  300
LVDSLNQHHI HSNIISEDDM LVLDVLNSLV NAPSKMSKLE IGAPSGSHGK TDSVLSDRRD  360
KGHPTTDLSK QGKAIGKSGA SKTGKKRHKK LLGAEVLAEA QNISVNNLVL PEVPRVGITA  420
DSSLCTDSAK VGIPEASEDI STKGPSVTTE IKSEIRMSRR TRRKHQMQCK TKHVSCNEDS  480
DNLQAKKLLH CLSSESLRRW CTYEWFYSAV DYPWFSDNEF VHYLDHAKLS HLSRLTRSEW  540
SAIRSSLGKP RRFSDHFLAV EKEKLEDYRE KVRKIYAQLR DGSRDSLPAD LARPFSIGQE  600
VIVRHPSSRE LCDGKVVMMG PDCYKVHFVN PDLGVDIVKD TDCMPVNWLY NRPDNMRRSC  660
LSNNVYSILE TEHIPDLAPS ENWDRAVHGV TVTSDKQLKV ESVVNGERPS YWSTSDGHPT  720
KSRGRPDNNA GHNYELESYI AAFVQKSLSR ARQMVDEAMQ ANSEGSDVRV WMPNQETDCV  780
GPQSEAAVRG AQLPSSLISN CIATVLSIKR LSDSRHPPAN IAGVLERASS MLRPSCPENL  840
AIYKDIETYL SVIANQILAL VPTALGNCGP PMSPMSPR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816481.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A2S3HYQ70.0A0A2S3HYQ7_9POAL; Uncharacterized protein
STRINGPavir.J02622.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-63DNA binding