PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04305.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 849aa    MW: 94580.5 Da    PI: 9.1706
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04305.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-094686345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W+++E   +++a +q+G++ Wk+I+  +g g++  +++s + 
   Pahal.E04305.2 46 KWSKDELTHFYEAYRQHGKD-WKKISLAVG-GKSSDMVRSLYS 86
                     8*****************99.*********.*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7574299IPR017884SANT domain
SMARTSM007170.00534391IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-94489IPR009057Homeodomain-like
CDDcd001674.79E-54683No hitNo description
Gene3DG3DSA:1.10.10.607.0E-44685IPR009057Homeodomain-like
PfamPF002494.5E-84685IPR001005SANT/Myb domain
SMARTSM011354.0E-38476577IPR033471DIRP domain
PfamPF065844.0E-31476576IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MAPAKGSRTI NKTIIKGYED QQQYDDPPSS SKAKQKKRKI SDLDPKWSKD ELTHFYEAYR  60
QHGKDWKKIS LAVGGKSSDM VRSLYSVHRT FLSLPERQAT AMGFIALVTG HHNASEKSTS  120
HIGDYQMVRA SGKARRRGEA TQQKATERPD LHDHHEGTIS GFSSSFKKRY YGDFVRNSRN  180
HAVRRRTPRI PVIAPAVRNT IDEASPDRSS GINETNKAGQ DHTFLDTKAT GDTAICQKQL  240
KKTRIQQPTE DGQTGKVEHE TVMASDEGNK LVDSLNQHHI HSNIISEDDM LVLDVLNSLV  300
NAPSKMSKLE IGAPSGSHGK TDSVLSDRRD KGHPTTDLSK QGKAIGKSGA SKTGKKRHKK  360
LLGAEVLAEA QNISVNNLVL PEVPRVGITA DSSLCTDSAK VGIPEASEDI STKGPSVTTE  420
IKSEIRMSRR TRRKHQMQCK TKHVSCNEDS DNLQAKKLLH CLSSESLRRW CTYEWFYSAV  480
DYPWFSDNEF VHYLDHAKLS HLSRLTRSEW SAIRSSLGKP RRFSDHFLAV EKEKLEDYRE  540
KVRKIYAQLR DGSRDSLPAD LARPFSIGQE VIVRHPSSRE LCDGKVVMMG PDCYKVHFVN  600
PDLGVDIVKD TDCMPVNWLY NRPDNMRRSC LSNNVYSILE TEHIPDLAPS ENWDRAVHGV  660
TVTSDKQLKV ESVVNGERPS YWSTSDGHPT KSRGRPDNNA GHNYELESYI AAFVQKSLSR  720
ARQMVDEAMQ ANSEGSDVRV WMPNQETDCV GPQSEAAVRG AQLPSSLISN CIATVLSIKR  780
LSDSRHPPAN IAGVLERASS MLRPSCPENL AIYKDIETYL SVIANQILAL VPTALGNCGP  840
PMSPMSPR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816481.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A2S3HZA00.0A0A2S3HZA0_9POAL; Uncharacterized protein
STRINGPavir.J02622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-63DNA binding