PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04425.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 311aa    MW: 33612.4 Da    PI: 6.6804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04425.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-11178223550
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                     kr +r   NR +A+rsR RK+++i eLe+ v +L++e ++L  ++ 
  Pahal.E04425.1 178 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSTLSPRVA 223
                     8999*********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.0E-14174238IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.772176232IPR004827Basic-leucine zipper domain
PfamPF001702.7E-10178229IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-14178232No hitNo description
SuperFamilySSF579591.41E-11178232No hitNo description
CDDcd147031.61E-24179229No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAQLPPKIPA MAPAWPEFGG GHHHHHHQRS PSVGTFLAAP MPPLPPPQQH QQQPSWVEEF  60
LDFTAAKRGA HRRTVSDSVA FLEPGPDDGN AGVGAHDFDR LDDDQLLSMF SDDLPPPPQQ  120
QAAPAPAPVA SSSSPSDHNS INDEKTDRGE TEEAQSNCHG DAAAVPGQPA SAAAVDPKRV  180
KRILANRQSA QRSRVRKLQY ISELERSVTS LQTEVSTLSP RVAFLDHQRS LLTLGNSHLK  240
QRIAALAQDK IFKDAHQEAL KKEIERLRQI YHQQSLKNAE SSPTADAAPI RGDKDLIASE  300
GTAAPCPPPS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817786.10.0basic leucine zipper 2-like
SwissprotQ5QNI51e-109BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A2S3HYX30.0A0A2S3HYX3_9POAL; Uncharacterized protein
TrEMBLA0A2T7DSS50.0A0A2T7DSS5_9POAL; Uncharacterized protein
STRINGPavir.J05339.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-91bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]