PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04503.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 362aa    MW: 38692.6 Da    PI: 4.2472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04503.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-20117167155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Pahal.E04503.1 117 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 167
                     689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-28117177No hitNo description
PfamPF008472.8E-12117167IPR001471AP2/ERF domain
SMARTSM003803.7E-34118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-29118176IPR001471AP2/ERF domain
PROSITE profilePS5103223.301118175IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21118175IPR016177DNA-binding domain
PRINTSPR003674.7E-10119130IPR001471AP2/ERF domain
PRINTSPR003674.7E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MWAMEEEMFV AVRRTEHVEV TSRAVEVPPA AKESGGGAGP RTVRVFCDDY DATDSSGDDD  60
DEEAAAAARR RVKRYVQEIR LERAVKEAPP AKAAASSGEA GAPRPEEEGR RAGAAEPRFR  120
GVRRRPWGKY AAEIRDPWRR VRVWLGTFDT AEEAAKVYDS AAIQLRGPDA TTNFEQVDDA  180
APAVPAEVAE RLPQPPQAAA SKNASSSATS YDSGEESHAA AASPTSVLRS FPPSAVAAGT  240
CSKKPAPAPV PAAPLPASRA PETDESSGVF GCPFMGDDCF AGEFPPLYTD FDLLADFPEP  300
SLDFLADIPE EPLSLASFSA TTTTSSSETS SEPPSPERWQ QVDDFFQDIT DLFQIDPLPV  360
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-21106174271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817676.11e-177ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2T7DT350.0A0A2T7DT35_9POAL; Uncharacterized protein
STRINGPavir.Eb00092.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-24cytokinin response factor 1