PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00029.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 778aa    MW: 83398.2 Da    PI: 6.0508
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00029.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19101156156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F++ ++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Pahal.F00029.1 101 KKRYHRHTQHQIQELEAFFKEFPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 156
                     688999***********************************************999 PP
2START201.53.6e-632915151206
                     HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     ela +a++elv++a+++ep+Wv         e +n++e+   f+++ +      ++ea+r+++vv+m++++lve l+d++ qW++ +     +a+
  Pahal.F00029.1 291 ELAVAAMEELVRMAQLGEPLWVPALidgaatETLNEEEYACGFPRGVGpkspeLRSEASRETVVVIMNHVNLVEMLMDVN-QWSTLFSsivsRAA 384
                     57899******************999*****************99777********************************.******99999*** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     tlev+s+g      galqlm+ae+q++splvp R++ fvRy++q+ +g+w++vdvS+d  +     + + R++++pSg+li++++ng+s+vtwve
  Pahal.F00029.1 385 TLEVLSTGvagnynGALQLMTAEFQMPSPLVPtRESQFVRYCKQHADGGWAVVDVSLDGLRTG--GAAGTRGRRRPSGCLIREMPNGYSRVTWVE 477
                     **************************************************************8..589*************************** PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     hv+ +++++h+l+r+lv+sgla+ga++w a l+rqce+
  Pahal.F00029.1 478 HVEADDAMVHELYRPLVSSGLAFGARRWAAVLERQCER 515
                     ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-2284142IPR009057Homeodomain-like
SuperFamilySSF466891.55E-1986159IPR009057Homeodomain-like
PROSITE profilePS5007117.24898158IPR001356Homeobox domain
SMARTSM003894.4E-1999162IPR001356Homeobox domain
CDDcd000864.74E-19100159No hitNo description
PfamPF000464.2E-17101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.601.8E-4143185IPR009057Homeodomain-like
PROSITE profilePS5084842.442282518IPR002913START domain
SuperFamilySSF559614.26E-31285517No hitNo description
CDDcd088751.48E-120286514No hitNo description
SMARTSM002346.2E-62291515IPR002913START domain
PfamPF018525.5E-52292515IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-5362486IPR023393START-like domain
SuperFamilySSF559611.3E-24540762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MMIPAGRNMP AAGMIGGLAS YAASLGQNMM DGQHQLVVMQ QQQNHGQQQA ATSGSDTHGP  60
RHDELLMESK SGSDNMEGGI GSGSGGEELQ EEDLSLQRPR KKRYHRHTQH QIQELEAFFK  120
EFPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKTQQE RQENTQLRAE NEKLRAENAR  180
YKDALTNAAC PNCGGPATAV IGEMSFDEHH LRIENMRLRD EIDRISAIAA KYVGKSATGM  240
LPNSSNISSV VAAPYPPPLS THHLITGAGD MFSSLHHHGA AAGFDKPLVI ELAVAAMEEL  300
VRMAQLGEPL WVPALIDGAA TETLNEEEYA CGFPRGVGPK SPELRSEASR ETVVVIMNHV  360
NLVEMLMDVN QWSTLFSSIV SRAATLEVLS TGVAGNYNGA LQLMTAEFQM PSPLVPTRES  420
QFVRYCKQHA DGGWAVVDVS LDGLRTGGAA GTRGRRRPSG CLIREMPNGY SRVTWVEHVE  480
ADDAMVHELY RPLVSSGLAF GARRWAAVLE RQCERLASAM ASGVPAAPAG GDTGVVTSAE  540
GRRSMLRLAE RMVASFCGGV TASTTHQWTT LSGSGPEDVR VMTRKSVDDP GRPPGIILNA  600
ATSFWLPVPP ARVFSFLRDD ATRSEWDILS NGGDVQEMAH IANGRDHGNA VSLLRVNNAN  660
SNQSNMLILQ ECCTDATGSY VIYAPVDVVA MNVVLNGGDP DYVALLPSGF AILPDGPGAG  720
GGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKAALAADPA GGGGGAR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819913.10.0homeobox-leucine zipper protein ROC7-like
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLA0A2S3I0P50.0A0A2S3I0P5_9POAL; Uncharacterized protein
STRINGSi013279m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein