PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00402.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 188aa    MW: 19529.9 Da    PI: 9.9576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00402.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000457294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  Pahal.F00402.1 72 FSCTYCRRKFFSSQALGGHQNAH 94
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-66999No hitNo description
PROSITE profilePS5015710.9287299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNCILQRLSN LSSLTARLCS IATKKALMEK QPAAGNDVNL DLRLVHHPAA ASRRHRDLPS  60
PAAAANEPDR TFSCTYCRRK FFSSQALGGH QNAHKLERSL AKRSRELSGA VAAGAAVSSS  120
SSSVGAAASE IGSWYPAPHA WGAGDQAAAT AAVVSWIADG GRRHAYRVQA AAAAGDGADD  180
IDLSLKL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039287e-49AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11.
GenBankAP0054807e-49AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07.
GenBankAP0149647e-49AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126167e-49CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822138.11e-111zinc finger protein 36-like
TrEMBLA0A2T8II901e-110A0A2T8II90_9POAL; Uncharacterized protein
STRINGPavir.Fb02284.1.p9e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-18zinc finger protein 2