PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00431.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 149aa MW: 16162.4 Da PI: 10.2737

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00431.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.8	9.5e-13	65	107	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r rk+kNRe+A rsR+R++a++ eLe++v L ae ++L+ Pahal.F00431.1 65 RRRERKMKNRESAARSRARRLAYVNELEKEVSLLRAEKEELRR 107 7889**********************************98874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-9	61	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.415	63	107	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-12	65	110	No hit	No description
Pfam	PF00170	7.3E-10	65	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.88E-11	65	111	No hit	No description
PROSITE pattern	PS00036	0	69	83	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEPQRGGEQL AWGATGAASP CLCPAAVASS AAGAPAGNVF PRQALEQEML RRAELQLQGG 60 GGGDRRRERK MKNRESAARS RARRLAYVNE LEKEVSLLRA EKEELRRLCE EVGSGMLLPH 120 CFQLKEAAEA PAKRGPHQRL QRTSSAPF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820332.1	1e-100	protein FD-like isoform X1
TrEMBL	A0A2S3I4L9	4e-99	A0A2S3I4L9_9POAL; Uncharacterized protein
STRING	Pavir.Fa00021.1.p	1e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15193	17	19

Link Out ? help Back to Top
Phytozome	Pahal.F00431.1