PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00450.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 310aa    MW: 31367.4 Da    PI: 8.0815
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.14.5e-681072503153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                     +gt+sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqq+la+         a++ skr+r+   ++ s++++t++ss+e++
  Pahal.F00450.1 107 AGTISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQHLATG--------AAEPSKRPRDA-GAQPSSTTATTTSSGEQQ 192
                     6899*************************************************9987........56789999997.455555556666666655 PP

          DUF702  98 ke..letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     ++  +  +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++
  Pahal.F00450.1 193 QQmaMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIAGHVFKGILHDVGPD 250
                     551155678***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-62109250IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.4E-28111153IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-23201249IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAGFPLGGGG GGGGGHHGRG GGGDHHHHHP HVSPSSGSDS ATAAAAAAAA YLYTTAAAAP  60
RGGGFQLWPH HPAQEHHFYA PNIIRFADDP AAGSSRGGRG SASGAGAGTI SCQDCGNQAK  120
KDCAHMRCRT CCKSRGFDCP THVKSTWVPA AKRRERQQHL ATGAAEPSKR PRDAGAQPSS  180
TTATTTSSGE QQQQMAMVGE RFPREVSSEA VFRCVRLGPV DEADAEVAYQ TTVSIAGHVF  240
KGILHDVGPD PSVAAGGGFR HAAEGSSPST AAAGEGSVAG PVSSSAVVMD PYPTPGPYGG  300
APFFHGHPR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687730.0EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821984.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A2S3I4H00.0A0A2S3I4H0_9POAL; Uncharacterized protein
STRINGPavir.Fb02329.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-51Lateral root primordium (LRP) protein-related