PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00514.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 376aa MW: 39586.2 Da PI: 6.1316

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00514.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.7	1.2e-08	194	252	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i+eLe+kv+ ++ e +aL+ +l l+ a l++e+ Pahal.F00514.1 194 KKAKRIINNRQSAARSKERKMRYIAELERKVQFMQREATALATQLALLQRDTAGLTAEN 252 89**********************************************99999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	190	254	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.6E-7	192	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.634	192	255	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-7	192	248	No hit	No description
SuperFamily	SSF57959	5.49E-10	194	248	No hit	No description
CDD	cd14703	8.23E-22	195	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MNVDKTPIPG GGGGDAGGGG GGGCAGNVPA MQSSCDAVAA SPAPHTECDI SRMPDSPMRK 60 PGHRRALSDI IGLPEDLDLG APGAGDGPAL SDENEEELFS MFLDVEKLNS RCGASESESS 120 CAMAGGGGEA TQTSAAPGAG LRPKHQQRHS MDASSSIDTE NLFGTSAMEG VSPAEAKKAM 180 SAAKLAELAL IDPKKAKRII NNRQSAARSK ERKMRYIAEL ERKVQFMQRE ATALATQLAL 240 LQRDTAGLTA ENSELKIRLQ NTEQQVHLQD ALNEALKSEL QRLKMATGQM GSGGGGAMSF 300 HTSPHPFGVS QQVFHPNQAM PPFVAMQQQQ HPNQPLHPLQ TQQLQQAALN LNMNGPAPAP 360 NQWHWGDAWS ESSSS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MNVDKTPIPG GGGGDAGGGG GGGCAGNVPA MQSSCDAVAA SPAPHTECDI SRMPDSPMRK  60
PGHRRALSDI IGLPEDLDLG APGAGDGPAL SDENEEELFS MFLDVEKLNS RCGASESESS  120
CAMAGGGGEA TQTSAAPGAG LRPKHQQRHS MDASSSIDTE NLFGTSAMEG VSPAEAKKAM  180
SAAKLAELAL IDPKKAKRII NNRQSAARSK ERKMRYIAEL ERKVQFMQRE ATALATQLAL  240
LQRDTAGLTA ENSELKIRLQ NTEQQVHLQD ALNEALKSEL QRLKMATGQM GSGGGGAMSF  300
HTSPHPFGVS QQVFHPNQAM PPFVAMQQQQ HPNQPLHPLQ TQQLQQAALN LNMNGPAPAP  360
NQWHWGDAWS ESSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035985	0.0	BT035985.1 Zea mays full-length cDNA clone ZM_BFb0090M08 mRNA, complete cds.
GenBank	JX469928	0.0	JX469928.1 Zea mays subsp. mays clone UT3186 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822526.1	0.0	transcription factor RF2a-like
Swissprot	Q69IL4	1e-113	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A2S3I4C0	0.0	A0A2S3I4C0_9POAL; Uncharacterized protein
STRING	Pavir.Fa00247.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	5e-65	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.F00514.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]