PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00567.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 343aa    MW: 35175.2 Da    PI: 11.7918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00567.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36e-21143193155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a+++++g
  Pahal.F00567.1 143 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAALRFKG 193
                     68********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-14143193IPR001471AP2/ERF domain
CDDcd000181.80E-19143203No hitNo description
SMARTSM003803.1E-35144207IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22144202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32144201IPR001471AP2/ERF domain
PROSITE profilePS5103225.317144201IPR001471AP2/ERF domain
PRINTSPR003674.8E-12145156IPR001471AP2/ERF domain
PRINTSPR003674.8E-12167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGVVCCLPAL RETGSKQAWI VPEKTPPPPP LLRAEATVAG GLRAMETQLS RRQEEEEGSS  60
AAAARGGPGG CGRRRSAPSS SRRSRTSSAP GGGSSSSSSP PRRRTTSSPS SRRRPCSGTT  120
GSKSGSGARP SAVATPERLL PRPRYRGVRQ RPWGKWAAEI RDPVKAARVW LGTFDTAEDA  180
ARAYDDAALR FKGAKAKLNF PPAAFRQGQH AGVAVAVAAP GPGHHHHAAA HLLHHRKQLA  240
GAASTSSTSR RPGPGPLHHL QGATAPGAAA AGAAGGVRAH QVSSEFPDLS QYAHILQSGD  300
LDLLAVSGGL TPGQSASSAT TAASSSSAPP EEPPPPRREP TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23145201663ATERF1
3gcc_A5e-23145201663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939962e-66FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822482.12e-64uncharacterized protein LOC112898369
STRINGSi013986m3e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2564555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-22related to AP2 6l