PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00588.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 231aa MW: 24310.8 Da PI: 10.7729

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00588.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.2	6.9e-32	20	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tksgyWkatgkdk 90 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p++++a+e e yfF+ r + g rk+ a t+sg+Wk gk+k Pahal.F00588.1 20 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSLDPWDIPAAADASEGEKYFFAVRPASVGGGCRKSGArspaTASGRWKPAGKEK 113 79**************************.8899999*******88888888*******9987776543334499******* PP NAM 91 evlsk.....kgelvglkktLvfy.....kgrapkge......ktdWvmheyrl 128 +v+ ++ lvg+k+ ++f k ++ + Wvmheyrl Pahal.F00588.1 114 PVVLPrpcggGSLLVGVKRAMTFAprrkkK-----ASapsaalAAGWVMHEYRL 162 99899877777*******655332.....33233445889****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-41	16	188	IPR003441	NAC domain
PROSITE profile	PS51005	42.498	20	188	IPR003441	NAC domain
Pfam	PF02365	6.0E-20	21	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KAFGVPLPAA VIPVVRDLYS 60 LDPWDIPAAA DASEGEKYFF AVRPASVGGG CRKSGARSPA TASGRWKPAG KEKPVVLPRP 120 CGGGSLLVGV KRAMTFAPRR KKKASAPSAA LAAGWVMHEY RLAAPLHKNG CSLAQAEGEW 180 VVCRVFQTQR SSNRPRRRGT PAGHAAAAAS PSSSTASCVT DGSDQEEVSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-30	20	194	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-30	20	194	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-30	20	194	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-30	20	194	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-30	20	194	20	174	NAC domain-containing protein 19
3swm_B	3e-30	20	194	20	174	NAC domain-containing protein 19
3swm_C	3e-30	20	194	20	174	NAC domain-containing protein 19
3swm_D	3e-30	20	194	20	174	NAC domain-containing protein 19
3swp_A	3e-30	20	194	20	174	NAC domain-containing protein 19
3swp_B	3e-30	20	194	20	174	NAC domain-containing protein 19
3swp_C	3e-30	20	194	20	174	NAC domain-containing protein 19
3swp_D	3e-30	20	194	20	174	NAC domain-containing protein 19
4dul_A	3e-30	20	194	17	171	NAC domain-containing protein 19
4dul_B	3e-30	20	194	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820406.1	1e-165	NAC domain-containing protein 18-like isoform X1
TrEMBL	A0A2S3I494	1e-163	A0A2S3I494_9POAL; Uncharacterized protein
STRING	Si014408m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11818	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	6e-36	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Pahal.F00588.1