PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00588.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 230aa    MW: 24239.7 Da    PI: 10.7729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00588.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.11.5e-31201611128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tksgyWkatgkdk 90 
                     lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p +++a+e e yfF+ r  +   g rk+ a    t+sg+Wk  gk+k
  Pahal.F00588.2  20 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSLDPWDIP-AADASEGEKYFFAVRPASVGGGCRKSGArspaTASGRWKPAGKEK 112
                     79****************************.8899999***********.556677899********99987776543334499*********** PP

             NAM  91 evlsk.....kgelvglkktLvfy.....kgrapkge......ktdWvmheyrl 128
                     +v+       ++ lvg+k+ ++f      k     ++       + Wvmheyrl
  Pahal.F00588.2 113 PVVLPrpcggGSLLVGVKRAMTFAprrkkK-----ASapsaalAAGWVMHEYRL 161
                     ***99899877777**********655332.....33233445889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4016187IPR003441NAC domain
PROSITE profilePS5100542.28220187IPR003441NAC domain
PfamPF023655.6E-2021161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KAFGVPLPAA VIPVVRDLYS  60
LDPWDIPAAD ASEGEKYFFA VRPASVGGGC RKSGARSPAT ASGRWKPAGK EKPVVLPRPC  120
GGGSLLVGVK RAMTFAPRRK KKASAPSAAL AAGWVMHEYR LAAPLHKNGC SLAQAEGEWV  180
VCRVFQTQRS SNRPRRRGTP AGHAAAAASP SSSTASCVTD GSDQEEVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-282019320174NAC domain-containing protein 19
3swm_B1e-282019320174NAC domain-containing protein 19
3swm_C1e-282019320174NAC domain-containing protein 19
3swm_D1e-282019320174NAC domain-containing protein 19
3swp_A1e-282019320174NAC domain-containing protein 19
3swp_B1e-282019320174NAC domain-containing protein 19
3swp_C1e-282019320174NAC domain-containing protein 19
3swp_D1e-282019320174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820407.11e-164NAC domain-containing protein 18-like isoform X2
TrEMBLA0A2S3I4F71e-163A0A2S3I4F7_9POAL; Uncharacterized protein
STRINGSi014408m1e-124(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.18e-36NAC domain containing protein 41