PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00649.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 535aa    MW: 60477.1 Da    PI: 4.7979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00649.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07390432145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+W++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
   Pahal.F00649.1 390 RGKWSKSDTDVFYQGLQQFGSD-FAMIQQLLP-DKTRQQVRAKFK 432
                      89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.50.408.6E-233495No hitNo description
SuperFamilySSF545342.55E-164095No hitNo description
PfamPF002543.6E-95797IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domain
PROSITE profilePS5005913.39462119IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domain
SuperFamilySSF466893.21E-10381438IPR009057Homeodomain-like
PfamPF159633.4E-24383462No hitNo description
Gene3DG3DSA:1.10.10.601.4E-5387436IPR009057Homeodomain-like
PROSITE profilePS512939.136388439IPR017884SANT domain
SMARTSM007179.2E-8389437IPR001005SANT/Myb domain
CDDcd001671.05E-4392433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDEDFEMPPA GADEMMGDDE MGDFGGDEGP VMKVGEEKEL GKQGLKKKLL KEGEGWETPE  60
VGDEVEVHYT GTLLDGTKFD SSRDRGDPFK FKLGQAEATC KSQPNVGREK GKGKSVSFGL  120
SDASGVVTST VTNSEMGNFS NSCNDKLTDE NLRNLSQQTV EKEHNDNESW YHEGEPLDHA  180
VEQLPKSGIG ENRSSMKLRS RKKSQKVGTP KHTDDYFDED SVEPSLVEED NDSGDDYTAG  240
TNRKVRKKSR DDVEEPQQQN VQKDKSQVSS RGRKRTLKDA SAEKPEKKLT HRIRQRRAKE  300
VKTLLEKPHE INPMKLSAAH LRLLQEARER VNAKENPSGP SSNTSFQFHD MDDLDYGDEE  360
ARNFDNDRTQ NHVQDTKKLN YHSYMNKQTR GKWSKSDTDV FYQGLQQFGS DFAMIQQLLP  420
DKTRQQVRAK FKTEEKKNPL LVHDAIIHRS GDNLYFKKVI KNLNIEDVAQ QEINNTHKQD  480
GASSEPGKED ALDDCIHEED DSNWLDEEPG VQKPEEHASG NDDDGDLGDV FDWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jym_A9e-1928991283FK506-binding protein (FKBP) from wheat
3jym_B9e-1928991283FK506-binding protein (FKBP) from wheat
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646931e-117EU964693.1 Zea mays clone 280884 peptidyl-prolyl isomerase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820633.10.0transcription factor TFIIIB component B''-like isoform X3
TrEMBLA0A2T8IHR50.0A0A2T8IHR5_9POAL; Peptidylprolyl isomerase
STRINGPavir.Aa02686.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.19e-34MYB_related family protein