PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00672.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 448aa    MW: 48654.3 Da    PI: 7.5954
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00672.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31361417360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d++v ei+Y+geH h+k
  Pahal.F00672.1 361 DGYNWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTI-DGQVAEIVYSGEHSHPK 417
                     9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.24E-3621241No hitNo description
PROSITE profilePS5060013.59228198IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1306.3E-590192No hitNo description
PfamPF029021.5E-998196IPR003653Ulp1 protease family, C-terminal catalytic domain
PROSITE profilePS5081122.745354418IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-26355418IPR003657WRKY domain
SuperFamilySSF1182904.71E-24357418IPR003657WRKY domain
SMARTSM007742.9E-32359417IPR003657WRKY domain
PfamPF031064.6E-24361416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGLGSRPAST STGGEKKGEE RVLSHGDAVL IRSDLAILRG PRFINDRIIA FYFAHLSAGL  60
GDDLLLLPPS IPYLLSNLPD PASVAAIAEP LRLASRRLVL LPVNDNPDAS VPEGGSHWTL  120
LVLDNTTSPS GPRFVHHDSI RGAPNLPVAS HLADTLRPLL LQSDSRRRGA VPVVEGPTPR  180
QPNGYDCGVY VMAIARAICG WWKSGHGGHR GGDWFEAVRT EVEADSVEAM RGELLQLITT  240
LIQDKANARK MQRHEKIAAL KPVASRPFSS FRSFPKLLQD FTSTGSPPIT VLEEAVLVKP  300
KATRFPSLPS ELPTEITATI DAGSDTTCEE MEVDTEQENC CGHLTTCHTV KKPTGSRLSF  360
DGYNWRKYGQ KKVKGSEFPR SYYKCTHPSC PVKRKVETTI DGQVAEIVYS GEHSHPKPRP  420
PRTPLSSPST AEVVVCGVHG TDDTMQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xt9_A2e-25222415209Sentrin-specific protease 8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683533.10.0uncharacterized protein LOC101761160
TrEMBLT1LWY30.0T1LWY3_TRIUA; Uncharacterized protein
STRINGPavir.Fa00406.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.27e-27WRKY family protein