PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00692.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 200aa    MW: 21357.1 Da    PI: 8.0173
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00692.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.4e-31331311101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca+dCvlapyf a+qp+++a vh +FG+snv+k+l+ lp +er +a+++++ eA++r++dP    +gvi +lqq+++ +k++la
  Pahal.F00692.1  33 RCAACKYLRRRCAPDCVLAPYFRASQPRRYADVHAVFGTSNVTKVLQGLPVQERGRAADTMATEARWRVQDPLL--HGVIDRLQQEIRAVKHKLA 125
                     6***********************************************************************96..899**************** PP

          DUF260  96 llkeel 101
                     +++++l
  Pahal.F00692.1 126 RTRAQL 131
                     999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.72132131IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3033128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSSAGGNME EVVEHQQQLD YGGGGGGSNN PRRCAACKYL RRRCAPDCVL APYFRASQPR  60
RYADVHAVFG TSNVTKVLQG LPVQERGRAA DTMATEARWR VQDPLLHGVI DRLQQEIRAV  120
KHKLARTRAQ LAVHARGAPP PPPGTQQPML SLPPPPPQPL AAAAAAAVHA GAHGVAVHDG  180
DDEAPLMDPD EFLDLDGRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-253413712117LOB family transfactor Ramosa2.1
5ly0_B2e-253413712117LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683529.14e-75LOB domain-containing protein 24
TrEMBLA0A2T8IHN71e-136A0A2T8IHN7_9POAL; Uncharacterized protein
STRINGPavir.Cb01140.1.p1e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.18e-34LOB domain-containing protein 24