PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00719.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 644aa    MW: 66384.1 Da    PI: 9.6543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00719.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-092473445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45
                     W t+E++ll++av+++G+ +W+++a +++         ++t+  c++r++
   Pahal.F00719.1 24 WGTWEELLLACAVRRHGTSSWDSVAMEVQsrrpasaaARLTPTGCRLRFR 73
                     *****************************999999998888888999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-42078IPR001005SANT/Myb domain
CDDcd001675.14E-42458No hitNo description
PfamPF002494.2E-92473IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.108.0E-13282407IPR001487Bromodomain
SMARTSM002976.0E-8293409IPR001487Bromodomain
SuperFamilySSF473705.36E-13297406IPR001487Bromodomain
PfamPF004391.0E-8310394IPR001487Bromodomain
PROSITE profilePS5001410.125312390IPR001487Bromodomain
CDDcd043694.98E-11315404No hitNo description
Gene3DG3DSA:1.20.920.108.0E-13464475IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAATG GEIWGTWEEL LLACAVRRHG TSSWDSVAME VQSRRPASAA  60
ARLTPTGCRL RFRLLHRRFA AGAENGDGGG ADADEDPDAA AADGWVEELR KLRVAELRRE  120
VERYDLSIGS LQSKVKRLKE ERERSISGEA NPAAVKAEED EEPAAGKGSL EDDAAGGEDR  180
VSGGESGRSC RESNSSDLKR PVNDAGTASA AGDGAAAMEE GEEEATAAGV SVDVKREEVS  240
GESVAGSKEA DKESSDVQSS ASPSRRRERE GGGGGEGGEE AETEEASASP SARAALPAAE  300
AEALLAFVES VRTSKPGSVF ERRLESQDDA KYRSTIRRHV DLETVRSKLE GGGGGGGGGA  360
CYGSASEFYR DLLLLCANAL VFFPRGSPEH TAAARTRALV SNHMAASLRK DQPGTSGKAA  420
APAPKKAKAE ADVGSLLEKT APIIVCRKRS SIAKAAAAAT KDDKAEKVET DKEEENEAGK  480
KKPGGAKDKA PRGLRTNKTR AAPARKAASN QKTGDDDSDS DGPAEGTRKP DKKGGGGATG  540
SGAGAAKKRN AVNFLNRMKQ GSAPSTERVS LLETLKLSAA AEQKKAGKGS QGKKEAAGGS  600
GSKRGTPSGR RNVGRPPKRA AAPSSPPPAK RGRGGGGKRG GRK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820863.10.0uncharacterized protein LOC112896947
TrEMBLA0A2S3I3Z60.0A0A2S3I3Z6_9POAL; Uncharacterized protein
STRINGPavir.Fb01943.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-19DNA-binding bromodomain-containing protein