PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00750.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 201aa    MW: 22415.6 Da    PI: 12.2238
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP108.93.2e-3472147277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv++C adl+ a  y+rrhkvC++hs +++vlv+ + qrfCqqCsrfh+l efD +krsCrrrLa+h e rr+++
  Pahal.F00750.1  72 CQVDHCLADLTGAIAYFRRHKVCQAHSVTTEVLVASRIQRFCQQCSRFHRLAEFDGHKRSCRRRLAGHHEWRRRRN 147
                     *******************************************************************998666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-2768133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.00869146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-3071148IPR004333Transcription factor, SBP-box
PfamPF031103.1E-2672145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MPRTDRAKMG PLTGDAEGGR RDPDGRQPAG SHGALTFSAR FRPRRGRSRL SGRARWSGPG  60
AGSRRGCARR LCQVDHCLAD LTGAIAYFRR HKVCQAHSVT TEVLVASRIQ RFCQQCSRFH  120
RLAEFDGHKR SCRRRLAGHH EWRRRRNRPA DVAPQLMLPG NQENAAGRAQ DVVNLIPVIA  180
RLQGTSTHRA LSILFHSFVI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2670145984squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134145RLAGHHEWRRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821123.13e-98squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX042e-47SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M82e-47SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2T7D9H21e-85A0A2T7D9H2_9POAL; Uncharacterized protein
STRINGPavir.Fb01917.1.p5e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-35squamosa promoter binding protein-like 14