PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00768.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 201aa    MW: 21109.7 Da    PI: 7.7262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00768.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.2e-123785456
             AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +GVr +k +grW+AeIr+p++   r + ++g+f +   Aa a++aa  +++ge
  Pahal.F00768.1 37 TGVRPRK-SGRWAAEIRVPTT---REKLWIGTFESDRLAALAYDAAVFCFYGE 85
                    69*9777.8*********976...49*********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-203596IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-143596IPR016177DNA-binding domain
PROSITE profilePS5103218.3343596IPR001471AP2/ERF domain
SMARTSM003805.2E-1935102IPR001471AP2/ERF domain
CDDcd000185.71E-173898No hitNo description
PfamPF008474.1E-73884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAALATNGSG AARRGTAWSG GGQPGVAFGR QKQSEWTGVR PRKSGRWAAE IRVPTTREKL  60
WIGTFESDRL AALAYDAAVF CFYGEDLPKT RRFNFPVAPR PDVPKILRGH LNVASVKAIA  120
EHHARSVDAV LPPLVRDAAA ALAAAATATE AGPSAGTTTY HDAPIAMADN NPVASAVDDG  180
QFSFDAHVIA GLMDLEPGEY *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822464.11e-144ethylene-responsive transcription factor ERF011-like
TrEMBLA0A2S3I3Y81e-142A0A2S3I3Y8_9POAL; Uncharacterized protein
STRINGPavir.Fb01907.1.p6e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-17ERF family protein