PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00769.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 189aa    MW: 20058.7 Da    PI: 11.7499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00769.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.8e-112977456
             AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +GVr +  +g W++eIr+p +   r+r ++g f t  +Aa a++aa  +++ge
  Pahal.F00769.1 29 TGVRARQ-WGGWAVEIRVPLS---RQRLWVGAFETDRQAALAYDAAIFCFYGE 77
                    59*9887.**********843...4**********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-132782IPR016177DNA-binding domain
PROSITE profilePS5103218.2152788IPR001471AP2/ERF domain
SMARTSM003804.4E-142794IPR001471AP2/ERF domain
PRINTSPR003673.5E-52839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-202889IPR001471AP2/ERF domain
CDDcd000182.13E-153090No hitNo description
PfamPF008475.2E-63076IPR001471AP2/ERF domain
PRINTSPR003673.5E-55066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MARKAAQAHS VGGQQPAAAA RQLKRSAWTG VRARQWGGWA VEIRVPLSRQ RLWVGAFETD  60
RQAALAYDAA IFCFYGEDLP RNRRFNFPAA PRPDIGEVVR ARLSVAAKDI ANRHARLSVA  120
AKDIANRHRQ QARSRPPAGP PCAAAETLQQ AAVAAGPSAG AGAPAAPAAG YHGRNPNGEV  180
ETTLRLCL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822465.13e-89ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2T8IHP21e-85A0A2T8IHP2_9POAL; Uncharacterized protein
STRINGPavir.Fa00469.1.p4e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-18ERF family protein