PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00770.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 258aa    MW: 26423.1 Da    PI: 9.5656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.8e-104994554
             AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    GVr  + +g ++AeIr ps+   r r+++g+f+ a +Aa a++aa+  ++
  Pahal.F00770.1 49 GVR-ERLWGGFAAEIRIPSS---RSRVWIGRFDHALQAALAYDAAMFLFY 94
                    998.777**********965...4*********************97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-1546113IPR001471AP2/ERF domain
PROSITE profilePS5103216.50246107IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-114798IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1848108IPR001471AP2/ERF domain
PfamPF008471.1E-44891IPR001471AP2/ERF domain
CDDcd000183.64E-1648109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MASSAPTSGS SGAARKGSRR GGSRRPAIAR PAPARRAGGG LHRDLGWVGV RERLWGGFAA  60
EIRIPSSRSR VWIGRFDHAL QAALAYDAAM FLFYGQKLPK LRRYNFPETP RPNVPEVVRK  120
GLTVANVKAI AEKHGRSFGR FLPLPPPVIP AAPPAAAPPQ MAEAGGAAAA AAAAAGAGVA  180
HAAPLQLAEA AGAGGVAVDA TPAGAGATTA AADRHGADEV YIDAEILTAA DCQLPCNPDD  240
DFIGLLDLDM DLIFSEI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822467.10.0ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2S3I3V51e-179A0A2S3I3V5_9POAL; Uncharacterized protein
STRINGPavir.Fb02057.1.p4e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.19e-10ERF family protein