PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00850.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

S1Fa-like

Protein Properties

Length: 81aa MW: 8821.51 Da PI: 10.4802

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00850.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	133.5	5.2e-42	11	80	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG++vllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Pahal.F00850.1 11 NVIIEEVnKGLNPGMVVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 55667778*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	1.0E-7	12	80	No hit	No description
Pfam	PF04689	3.3E-39	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MADQFADSAN NVIIEEVNKG LNPGMVVLLV VASFLLLFFV GNYALYVYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE *

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU957938	5e-94	EU957938.1 Zea mays clone 1634431 DNA-binding protein S1FA2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826480.1	2e-50	DNA-binding protein S1FA
Swissprot	Q7XLX6	2e-34	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A2S3I6H7	4e-49	A0A2S3I6H7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CUM1	4e-49	A0A2T7CUM1_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PT70	4e-49	A0A3L6PT70_PANMI; DNA-binding protein S1FA2
STRING	Pavir.Gb01773.1.p	2e-42	(Panicum virgatum)
STRING	Si011030m	3e-42	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Link Out ? help Back to Top
Phytozome	Pahal.F00850.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]