PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00906.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 245aa    MW: 26021.8 Da    PI: 10.9808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00906.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-2084134256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +grW+AeIrdp +   r+r +lg+f taeeAa+a++ a  +l+g+
  Pahal.F00906.1  84 HFRGVRRRP-WGRWAAEIRDPHN---RRRLWLGTFNTAEEAAAAYDTASIRLRGA 134
                     69*******.**********732...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3484147IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2284141IPR016177DNA-binding domain
CDDcd000182.31E-3084141No hitNo description
PROSITE profilePS5103224.02684141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3084142IPR001471AP2/ERF domain
PfamPF008471.1E-1384133IPR001471AP2/ERF domain
PRINTSPR003672.0E-108596IPR001471AP2/ERF domain
PRINTSPR003672.0E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGPNPSLQQL AAAAAEVAMT VSEPPLQPRA RVVRILVHDA DATDSSSSDD EAPPPPPRRA  60
RGGSSSVGAK RRVMEAVGAN PPVHFRGVRR RPWGRWAAEI RDPHNRRRLW LGTFNTAEEA  120
AAAYDTASIR LRGASARTNF PSARYPPPSE PAKPIISLTP EPGKVITLPP VPVKPTVPLQ  180
VKKEGGSYNG QVEGGSSELK AFAPKPMWEM IPGKRKKRPG CGNGSCLRIA IRAASVCVEE  240
VGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1984141563ATERF1
3gcc_A1e-1984141563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794389.11e-175ethylene-responsive transcription factor CRF3-like
TrEMBLA0A2S3IGU21e-173A0A2S3IGU2_9POAL; Uncharacterized protein
STRINGPavir.Ia00165.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.12e-22ERF domain protein 10