PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00959.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 339aa    MW: 35900.6 Da    PI: 10.1867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00959.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
   Pahal.F00959.1 103 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 147
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96896152IPR017930Myb domain
SuperFamilySSF466891.22E-1797152IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1899151IPR006447Myb domain, plants
SMARTSM007171.4E-11100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-12103146IPR009057Homeodomain-like
PfamPF002492.0E-12103147IPR001005SANT/Myb domain
CDDcd001672.78E-10103148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MPQDSRPAGM RLFGVTIAPV PPPAPEADPP DRDPSPNPPV AVREDVMRKC KSMGNLAALG  60
AAADGGGAGA DGGGAGDGYL SDGGLMQSSG KRRRAQERKK AVPWTEEEHR TFLAGLEKLG  120
KGDWRGIAKN FVTTRTPTQV ASHAQKYFLR QTNPNKKKRR SSLFDMMPGE LSPAPNCPIL  180
PPSMAKVHDV VAMTRQLQNS NLEGGSSSNT ANIAPQVGRD LPPVPSFRAT NMDSSFSKLN  240
GMEPFWRTPY PFRPIPRSPD GTSPSTPVAA NIASPVSKAN PTACTSTFLS PRSDTSSLPP  300
KADPPAETKD LELTVAPPSQ QNMTNMSSQN AVGVIQVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794580.0HF679458.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB52 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822191.10.0transcription factor MYBS3-like isoform X1
TrEMBLA0A2S3I0480.0A0A2S3I048_9POAL; Uncharacterized protein
STRINGSi014031m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-39MYB_related family protein