PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01042.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 248aa    MW: 26959.8 Da    PI: 4.6913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01042.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.91.7e-2757143187
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+kvltpsdv+k++rlv+pk++ae++  +   +++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++   
  Pahal.F01042.1  57 FDKVLTPSDVGKLNRLVVPKQHAERFFPVAGAGTQLCFEDRGGVPWRFRYSYWGSSQSYVMTKGWSRFVRAARLAAGDTVSFSRAAA 143
                     89************************777788899***********************************************96554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3648157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2854152IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-2555140No hitNo description
SMARTSM010193.6E-1857153IPR003340B3 DNA binding domain
PROSITE profilePS5086313.43757156IPR003340B3 DNA binding domain
PfamPF023622.0E-2457144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MHMDLSLGTT VDDTQEVQEE HQEEEQEDDL YQQQALGQDL QHGGGEPSHV MEREHMFDKV  60
LTPSDVGKLN RLVVPKQHAE RFFPVAGAGT QLCFEDRGGV PWRFRYSYWG SSQSYVMTKG  120
WSRFVRAARL AAGDTVSFSR AAAAAGRYFI DYRHCQRRSR DINFGDSAAM PAWPMAVGIM  180
QRTGAVGGGA TMAVDTVPVP AGHGIEVGPT AGARSFRLFG FNVECSGDDD DAAASASAEV  240
EYVDGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-45521543112B3 domain-containing transcription factor NGA1
5os9_B8e-45521543112B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284101e-114KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822547.10.0putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD58e-77Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A2S3I0H60.0A0A2S3I0H6_9POAL; Uncharacterized protein
STRINGSi014362m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.19e-48B3 family protein