PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01061.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 364aa    MW: 38322.2 Da    PI: 7.5178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01061.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-10101126127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f++ GtC+y  +C+FaHg+
  Pahal.F01061.1 101 FKTKLCCKFRA-GTCPYVTNCNFAHGM 126
                     69*********.*************95 PP
2zf-CCCH43.45.8e-14242267126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  Pahal.F01061.1 242 WKTRICNKWEMTGYCPFGSKCHFAHG 267
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.55E-898131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-1498133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028100127IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7101126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385178206IPR000571Zinc finger, CCCH-type
SMARTSM003560.52178205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7178206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-8178206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-17237271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-10238272IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422241269IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11242267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWT NAAPSAGGDS AIWATEDDYR QWSNDPGYGD RNPSSRAGSE  60
QPPPGKKSRG GAGGGSGGGG GGDSGGSNST SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC  120
NFAHGMEELR KPPPNWQEIV AAHEEATEQR EEHQIPIMTS GSVVAGDGGG GGSQGGRAYK  180
GRHCKKFYTE EGCPYGEACT FLHDEQSKAR ESVAISLSPT VGSGGYNATS ATGGMVQKPS  240
NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHKYGGGLVD IDSRDAASTP DSKQAGASAK  300
APADSAAAST AMPPHADVYH LGIQSQRSTI VSQRSGHVQR PIQKWKGPDK ISRIYGDWID  360
ENE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354040.0BT035404.1 Zea mays full-length cDNA clone ZM_BFb0059F20 mRNA, complete cds.
GenBankBT0678900.0BT067890.1 Zea mays full-length cDNA clone ZM_BFc0191K02 mRNA, complete cds.
GenBankEU9640070.0EU964007.1 Zea mays clone 275074 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
GenBankJX4284640.0JX428464.1 Zea mays subsp. mays clone pUT3059 C3H31 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822166.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2S3I0E10.0A0A2S3I0E1_9POAL; Uncharacterized protein
STRINGPavir.Fb00417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-106C3H family protein