PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01063.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 283aa MW: 29652.2 Da PI: 5.3508

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01063.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	104	2.1e-32	43	205	75	250
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetger 164 +++++a+ +++++ P+l+++hltaNq+Il+a+++ +r+Hii +d+++ + Wp+Llq++++R+ gpp+++iTg g+ +++ l tg+r Pahal.F01063.1 43 ASSATAHLAYNQMAPFLRLAHLTANQTILDAAANGgtRRLHIIHLDATHSVLWPPLLQTITDRAdpdLGPPKVQITGAGP----DRDVLLCTGDR 133 455667778********************9977679**********************66667*******....9****** PP GRAS 165 LakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 L f +l++pf f++l +++l++ eL+++p+E+la + + +L+ +ks++P vv+++e+ea+ +s Pahal.F01063.1 134 LCTFTGSLNLPFLFHPLllpCTTQLAADPATELELHPDETLAFKYIA-----------------VFLNWIKSMNPSVVTLAEREASIGS 205 ************9666566777778899****9988766.................49****************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.369	1	282	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-30	43	205	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MARADWEAAW RDLSAAGDGN KACGEGVSTP AGQEAASSLG PGASSATAHL AYNQMAPFLR 60 LAHLTANQTI LDAAANGGTR RLHIIHLDAT HSVLWPPLLQ TITDRADPDL GPPKVQITGA 120 GPDRDVLLCT GDRLCTFTGS LNLPFLFHPL LLPCTTQLAA DPATELELHP DETLAFKYIA 180 VFLNWIKSMN PSVVTLAERE ASIGSDGGGR WGGGGEEGSD RWRGGFEARR RERCGVLEAA 240 GEPSRFGGRS VTGDFETWGA VAAEPAKGAS TSGGLERTSR PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-15	46	258	96	320	Protein SCARECROW
5b3h_A	2e-15	46	258	95	319	Protein SCARECROW
5b3h_D	2e-15	46	258	95	319	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	214	GGRWGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806722.1	7e-86	protein MONOCULM 1
Swissprot	Q84MM9	3e-51	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A2S3GM55	2e-84	A0A2S3GM55_9POAL; Uncharacterized protein
STRING	Pavir.J22770.1.p	1e-93	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-17	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01063.1

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]