PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01070.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 352aa    MW: 36927.5 Da    PI: 7.3528
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.4e-32163216255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pahal.F01070.1 163 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 216
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-29160217IPR009057Homeodomain-like
SuperFamilySSF466898.96E-16161217IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-24163216IPR006447Myb domain, plants
PfamPF002495.8E-7164215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTSP TPHDHHHHAA ALSARFFAAA GGGGGNGVGN PAAMPPSLQL  60
PVPLPLPLPV QLPMPPSAAA AAGAAGLYYH PDAAVLRPIR GVPLYQHPHT HAVPPTFPPH  120
SAAPGPCFCE PCHVAAGAWR RAGCGAGARV AGFPPAKRAA RAPRMRWTST LHARFVHAVE  180
LLGGHDRATP KSVLELMDVK DLTLAHVKSH LQMYRTVKNT ERPAASSDQA DGFENGSAGE  240
ICDDNSLDLH GYGGGKPESA AAARHGRLAA CNDHGSSTGA HCALWNSSSR EDWTGFPSES  300
NTGSMHSLKE QMQSKSLEIL SDMNSCVSET TSSTSELNLE FTLGRPQNRP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16164218357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570080.0EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821359.10.0probable transcription factor RL9 isoform X1
SwissprotQ0J2359e-44ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A2S3I0F70.0A0A2S3I0F7_9POAL; Uncharacterized protein
STRINGGRMZM2G123308_P021e-169(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.18e-37G2-like family protein