PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01146.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 244aa MW: 24412 Da PI: 5.7165

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01146.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.3	2e-52	47	142	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++q r+lPianvsrimk+ l anakisk+ake+vqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe yv plk yl++yre+ege Pahal.F01146.1 47 KDQGRLLPIANVSRIMKRSLAANAKISKEAKEMVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGE 141 7999*****************************************************************************************99 PP NF-YB 97 k 97 k Pahal.F01146.1 142 K 142 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-48	44	144	IPR009072	Histone-fold
SuperFamily	SSF47113	6.52E-37	49	148	IPR009072	Histone-fold
Pfam	PF00808	6.6E-26	52	116	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.2E-18	80	98	No hit	No description
PROSITE pattern	PS00685	0	83	99	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.2E-18	99	117	No hit	No description
PRINTS	PR00615	3.2E-18	118	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MKSRKGYLLS PVGSPPSDNE SGAAAAAGCG SSAGYGGGGG GGDSPAKDQG RLLPIANVSR 60 IMKRSLAANA KISKEAKEMV QECVSEFISF VTGEASDKCQ REKRKTINGD DLLWAMTTLG 120 FEAYVGPLKS YLNRYREAEG EKAAVLGGDG GAADDGPLGA GAIAAPGDRA GHDAGASADH 180 VGLMMGVGGG FGAAGGGTSY YAAAGRAYGG DGSKVVEFDG EEENGRGMQR GFGGGHLHGA 240 VQW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-42	47	137	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-42	47	137	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:20566706, PubMed:21148627). Regulates plant height by promoting cell elongation in the internodes (PubMed:20566706). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:20566706, ECO:0000269\|PubMed:21148627}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB124652	1e-163	AB124652.1 Oryza sativa Japonica Group Hd5 gene for imperfect Hd5 protein, complete cds, cultivar:Hayamasari.
GenBank	AB693201	1e-163	AB693201.1 Oryza sativa Japonica Group Hd5 gene for heading date 5, complete cds, cultivar: Kitaibuki.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821430.1	1e-173	nuclear transcription factor Y subunit B-11-like
Swissprot	Q0J7P4	3e-71	HD5_ORYSJ; Nuclear transcription factor Y subunit B-11
TrEMBL	A0A2S3I0K3	1e-172	A0A2S3I0K3_9POAL; Uncharacterized protein
STRING	Pavir.Fb00481.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-55	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Pahal.F01146.1

Publications ? help Back to Top
Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Dai X, et al. LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon). J Integr Plant Biol, 2012. 54(10): p. 790-9 [PMID:22963226] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]