PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01181.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 372aa MW: 40575.1 Da PI: 9.2773

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01181.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.6e-11	82	118	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 ++k++rr+++NReAAr+sR+RKka+i++Le+ +L Pahal.F01181.3 82 RDKVQRRLAQNREAARKSRLRKKAYIQNLETSRMKLA 118 79***************************98444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-8	79	125	No hit	No description
SMART	SM00338	0.0042	80	133	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-8	82	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.002	82	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.33E-7	84	125	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.3E-28	166	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MGIYGRQRHQ MAAAGVWGDP FRPDGDALAA VAAPVTAVAA PVDVDVETEV KFGNHLAQDD 60 VVPVEDAPPS SDSFGHDDAR PRDKVQRRLA QNREAARKSR LRKKAYIQNL ETSRMKLAQL 120 EQELTMARRQ QGAHAAGGLL APPVDPRVAA FEMEYARWVE DQKKQARELR AALQSGAPEF 180 QLRFLVDAAL AHYGALFEAK SRAARADAFF VLSGVWRAPA ERFFLWIGGF RPSELLKVLA 240 PQLDPLAEPQ ASAVRMLQNT ARQLEDALSQ GMNKLQQTLV DALMTVDAPD DAASGAGGGY 300 AARQMASAVG KLDDLVSFVD QADHLRQQTL RNMNKILTVP QAARGLLALA DYSQRLRALS 360 SLWAARPREP A*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MGIYGRQRHQ MAAAGVWGDP FRPDGDALAA VAAPVTAVAA PVDVDVETEV KFGNHLAQDD  60
VVPVEDAPPS SDSFGHDDAR PRDKVQRRLA QNREAARKSR LRKKAYIQNL ETSRMKLAQL  120
EQELTMARRQ QGAHAAGGLL APPVDPRVAA FEMEYARWVE DQKKQARELR AALQSGAPEF  180
QLRFLVDAAL AHYGALFEAK SRAARADAFF VLSGVWRAPA ERFFLWIGGF RPSELLKVLA  240
PQLDPLAEPQ ASAVRMLQNT ARQLEDALSQ GMNKLQQTLV DALMTVDAPD DAASGAGGGY  300
AARQMASAVG KLDDLVSFVD QADHLRQQTL RNMNKILTVP QAARGLLALA DYSQRLRALS  360
SLWAARPREP A*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820316.1	0.0	transcription factor TGA2.3-like isoform X2
Swissprot	Q39237	1e-111	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2S3I0M0	0.0	A0A2S3I0M0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7D490	0.0	A0A2T7D490_9POAL; Uncharacterized protein
STRING	Si013962m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-105	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01181.3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]