PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01254.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 199aa MW: 21581.9 Da PI: 4.3627

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01254.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	66.8	3.7e-21	75	128	3	53
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacel 53 ++fw+ q i+++t +k h+lPlarikki+kad dv mi+ eaPvl++kace+ Pahal.F01254.1 75 QAFWSGQlheIKQTTGLKTHSLPLARIKKIMKADSDVPMITGEAPVLFAKACEM 128 79*99888999**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.04E-16	36	148	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.9E-17	88	130	IPR009072	Histone-fold
Pfam	PF00808	3.7E-9	95	130	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDMEEQPSET IVNEGVTRGG TPAALASVAP SASNPSPSQD APDNPVIQLQ SSDKNQVASQ 60 QTQQPHNGHQ QQQPQAFWSG QLHEIKQTTG LKTHSLPLAR IKKIMKADSD VPMITGEAPV 120 LFAKACEMTL QKNDVTAALA GTEVFDFLVD IGPSDKLKGD GDDYSPLWSP DESPGPDLRN 180 VTCDDPRYYT YIHEYYSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-28	81	153	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820812.1	7e-88	nuclear transcription factor Y subunit C-4-like
TrEMBL	A0A2S3I0Z6	1e-145	A0A2S3I0Z6_9POAL; Uncharacterized protein
STRING	Pavir.Fa02054.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19726	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	7e-35	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Pahal.F01254.1