PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01273.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 295aa    MW: 32437.1 Da    PI: 9.397
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01273.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.2e-52111391129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +ppGfrFhP+d+elv +yL +k++g+ +    ++ +vd++k+ePwdLp+++  + kewyfF  rd+kyatg+r+nrat sgyWkatgkd++v++ 
  Pahal.F01273.1  11 MPPGFRFHPRDNELVLDYLLHKLSGRAHGG-AAMVDVDLNKCEPWDLPEAACVGGKEWYFFNLRDRKYATGQRTNRATVSGYWKATGKDRAVVAG 104
                     79*************************888.78***************7666789**************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + ++vg++ktLvfy+grapkg+kt Wvmhe+rle
  Pahal.F01273.1 105 gDAAVVGMRKTLVFYRGRAPKGRKTGWVMHEFRLE 139
                     56677***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-592174IPR003441NAC domain
PROSITE profilePS5100555.58811174IPR003441NAC domain
PfamPF023651.4E-2512138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSISMMEAR MPPGFRFHPR DNELVLDYLL HKLSGRAHGG AAMVDVDLNK CEPWDLPEAA  60
CVGGKEWYFF NLRDRKYATG QRTNRATVSG YWKATGKDRA VVAGGDAAVV GMRKTLVFYR  120
GRAPKGRKTG WVMHEFRLEP PAAPPPPSQQ RQLPAAARHQ RLKEDWVLCR VFYKSRTTTP  180
KLPSEDAQDG TRSTEPDLAA ALPLAPLTDT YTAFGATPTV TQQVSCFSGL PALPFKRPVS  240
LGDLLAFDTS EKVSVGTVML SSMPSNSSSV LELPPNCNWN QENVLSQMWN PLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-46618115174NAC domain-containing protein 19
3swm_B5e-46618115174NAC domain-containing protein 19
3swm_C5e-46618115174NAC domain-containing protein 19
3swm_D5e-46618115174NAC domain-containing protein 19
3swp_A5e-46618115174NAC domain-containing protein 19
3swp_B5e-46618115174NAC domain-containing protein 19
3swp_C5e-46618115174NAC domain-containing protein 19
3swp_D5e-46618115174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822017.10.0NAC domain-containing protein 21/22-like
SwissprotQ84TE68e-76NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3I0V70.0A0A2S3I0V7_9POAL; Uncharacterized protein
STRINGSi014180m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-71NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]