PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01337.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 236aa MW: 27126.7 Da PI: 9.4563

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01337.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.4	2.3e-17	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +t+s+v+ +l lp +f++++ + +++ t+tlede+ + e + ++ l++GW++F+ +++L +gD +vF+l++r++f +v Pahal.F01337.1 137 FVKPMTQSHVTGGFWLGLPTPFCRKYL-P-KRDETITLEDEEDDESETLY--LTRKM--GLSAGWRGFAIEHKLVDGDCLVFQLIERTKF--KVY 223 89**********************5.3.35669*9999999888..44443..39**********************98888..777 PP EE-S CS B3 96 vfrk 99 ++r+ Pahal.F01337.1 224 MIRA 227 7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.94E-23	130	228	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.7E-21	132	228	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.92E-23	135	226	No hit	No description
Pfam	PF02362	3.5E-15	137	227	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-19	137	228	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.871	137	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGTAQRKEMA DAVSYEEQRR RQVEANKRKL EELQLHHLSA AVREAAAKPS PAKKRKARVP 60 RDAAAEPLRR SGRVANLPEK PKYREEVQDF GRKVRRTYGS RRKDLANRVY ATDEERSHAI 120 TKAEELADEL GSSFPLFVKP MTQSHVTGGF WLGLPTPFCR KYLPKRDETI TLEDEEDDES 180 ETLYLTRKMG LSAGWRGFAI EHKLVDGDCL VFQLIERTKF KVYMIRASSY HEDEE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820060.1	1e-174	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	1e-124	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2S3I114	1e-172	A0A2S3I114_9POAL; Uncharacterized protein
STRING	Pavir.Fb00845.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-49	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01337.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]