PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01346.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 211aa    MW: 21457.1 Da    PI: 8.9514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01346.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-212676256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    + +GVr ++ +gr++AeIrd +     r  r++lg+f+t+eeAa+a++aa+++l+g+
  Pahal.F01346.1 26 RLRGVRKRP-WGRYAAEIRDpV-----RkSRVWLGTFDTPEEAARAYDAAARRLRGP 76
                    679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-142575IPR001471AP2/ERF domain
CDDcd000182.96E-172585No hitNo description
SMARTSM003803.8E-332689IPR001471AP2/ERF domain
PROSITE profilePS5103223.1692683IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-222684IPR016177DNA-binding domain
PRINTSPR003675.8E-102738IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-302884IPR001471AP2/ERF domain
PRINTSPR003675.8E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPRRSTSPA GSSSSGGSGS GLEQPRLRGV RKRPWGRYAA EIRDPVRKSR VWLGTFDTPE  60
EAARAYDAAA RRLRGPGATT NYPVHAQDLN AAAIPASRAS ASGSAVLSED ASSSTSRESP  120
LAVTVAVAAP PSLDLSLALP AVAGTPSSYQ LFLDPAAMVA VAPALLQFLP PKSEEEQSFS  180
GSASSAVFDA APAVGLGLDL NLALPAGMVM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-231483272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937237e-80AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821473.11e-143ethylene-responsive transcription factor 4-like
TrEMBLA0A2S3I1171e-142A0A2S3I117_9POAL; Uncharacterized protein
STRINGPavir.Fa01794.1.p3e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-21ERF domain protein 11