PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01347.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 212aa    MW: 21688.5 Da    PI: 8.1912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01347.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.7e-212777256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+eeAa+a++aa+++l+g+
  Pahal.F01347.1 27 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEEAARAYDAAARRLRGP 77
                    679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.07E-182686No hitNo description
PfamPF008471.6E-142676IPR001471AP2/ERF domain
PROSITE profilePS5103223.5122784IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212785IPR016177DNA-binding domain
SMARTSM003803.8E-322790IPR001471AP2/ERF domain
PRINTSPR003676.7E-102839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-302985IPR001471AP2/ERF domain
PRINTSPR003676.7E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAPKRSSSPA GSNGSAMCAP AAAEQPRLRG VRKRPWGRYA AEIRDPVRKA RVWLGTFDTP  60
EEAARAYDAA ARRLRGPRAA TNYPAQDPKA AEAAAAPAAS GSAVLSEDAS SSSSSCRDSP  120
LAVTVAVAAP QSQDLSLALP AMVAAQPYQL FLDPTAMVAV APALLQFLPP KSEEEQSFPG  180
SSSSSSVVFD AAPALGLGLD LNLAPPAGMV M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-212286974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937235e-84AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
GenBankEU9701535e-84EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankEU9753885e-84EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankKJ7277065e-84KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821472.11e-145ethylene-responsive transcription factor ERF098-like
TrEMBLA0A2T7D4Q31e-102A0A2T7D4Q3_9POAL; Uncharacterized protein
STRINGSi014474m3e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-19ERF domain protein 12