PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01348.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 167aa    MW: 17427.7 Da    PI: 10.4927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01348.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.2e-213181256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    + +GVr ++ +gr++AeIrdp     r +r++lg+f+t+eeAa+a++aa+++l+g+
  Pahal.F01348.1 31 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEEAARAYDAAARRLRGP 81
                    679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-173090No hitNo description
PfamPF008476.5E-153080IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-213189IPR016177DNA-binding domain
PROSITE profilePS5103223.5653188IPR001471AP2/ERF domain
SMARTSM003801.9E-313194IPR001471AP2/ERF domain
PRINTSPR003674.7E-103243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-303389IPR001471AP2/ERF domain
PRINTSPR003674.7E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAPRRPPSPA GSSSSGGGGS AERAAAEQQP RLRGVRKRPW GRYAAEIRDP ARKARVWLGT  60
FDTPEEAARA YDAAARRLRG PRAATNYPAA PAADEPCPPS SSAADSLPTT AAPARSPYLT  120
ATVPAAPALR QFLPLKGEEE RSRCFPGSSV GLGLDLNLPP PAEMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-203388763ATERF1
3gcc_A1e-203388763ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937232e-76AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821653.11e-111ethylene-responsive transcription factor 8-like
TrEMBLA0A2S3I1221e-109A0A2S3I122_9POAL; Uncharacterized protein
TrEMBLA0A2T7D4Q61e-109A0A2T7D4Q6_9POAL; Uncharacterized protein
STRINGPavir.Fa01728.1.p2e-45(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.19e-18ERF domain protein 11