PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01418.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 300aa    MW: 30184.7 Da    PI: 9.7347
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01418.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-061658542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ ++   +  +C  +   lC  C  + H        H++vp+
  Pahal.F01418.1 16 ACAVCGAA-AAVYCAADAAALCSPCDAAVHAAnllasrHERVPI 58
                    6*****88.*********************66899999999997 PP
2CCT66.48e-23190233144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R a+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Pahal.F01418.1 190 RVARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 233
                     89****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6131258IPR000315B-box-type zinc finger
SMARTSM003368.1E-121258IPR000315B-box-type zinc finger
PfamPF062032.7E-17190232IPR010402CCT domain
PROSITE profilePS5101716.331190232IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMGSEGSTSP AAGGAACAVC GAAAAVYCAA DAAALCSPCD AAVHAANLLA SRHERVPIAM  60
AAAAAASGVY DDLFAPDDVD AASSWPAAAP AQGQGSPQNG SSSTSFTTSD SGAEGRSLFD  120
LLSDVDLAAA ARVTGGGYLP DGVAPVHHGG AAPLWAHPGM AAWAAAWSPA DAAAVVVPGA  180
AAVVAAAAER VARVQRYREK RKNRKFQKTI RYASRKAYAE ARPRIKGRFV KRAAGARAPP  240
HRRTPTPPPR TPPTRLSSGS PSPTTPATTA SGSTSTPQPT GSCQASRMFQ TPREEGLQS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820002.11e-163zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A2T8IFX51e-161A0A2T8IFX5_9POAL; Uncharacterized protein
STRINGSi014224m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-15CONSTANS-like 5