PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01472.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 199aa    MW: 21038.8 Da    PI: 9.5814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01472.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.4e-091294187
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatg 87
                    lpp ++F+Ptd ++v +yL +  ++ ++++         + + Pw+L  ++ +a++++ +fF ++ k+   ++r+nr++       ++W+ + 
  Pahal.F01472.1 12 LPPACKFDPTDADVVAYYLSRAPSAIRIRT--------RTPCPPWELMrRHGHAGSDHAFFFGPTTKRG--SHRANRTVPageggGSTWHGQT 94
                    799****************99887777666........4689*****8344445666889999988875..5799997552333344688554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-11991IPR003441NAC domain
PfamPF023651.5E-61397IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEASRFGFDP SLPPACKFDP TDADVVAYYL SRAPSAIRIR TRTPCPPWEL MRRHGHAGSD  60
HAFFFGPTTK RGSHRANRTV PAGEGGGSTW HGQTSVETGL VLVRRGGDEY MITDPLLPVP  120
GAVISRARMD SKAKKRKHQQ PAPAADNNGG FMGETAGYKS ALVNTGEGAC ALLNAGEMVA  180
TSTTAKCPMR APAVTEGN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980219.11e-33NAC domain-containing protein 18
TrEMBLA0A3L6QZ891e-121A0A3L6QZ89_PANMI; NAC domain-containing protein 18-like
STRINGPavir.J22451.1.p3e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-07NAC domain containing protein 20