PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01484.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 474aa    MW: 52650.5 Da    PI: 6.7404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01484.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15126216199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp  f+++h  k  e++ ++led++g+  +  +   + +++  l++GW++F+  +++k+gD+v+F+l+++++f  +v 
  Pahal.F01484.2 126 FVKRMLQSHVVRGFWLGLPTYFCNKHLPK--EDTGIVLEDQNGQDHQTLY--LGVKQG--LSAGWRGFAIKHDIKVGDVVIFQLVRSTKF--KVY 212
                     89**********************99533..4457************999..666666..9***********************997777..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Pahal.F01484.2 213 IIRA 216
                     8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-19119217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-22120217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-23124215No hitNo description
PROSITE profilePS5086311.899126217IPR003340B3 DNA binding domain
SMARTSM010192.4E-15126217IPR003340B3 DNA binding domain
PfamPF023625.9E-14126216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAMDPPLKRK RGRPSGSQSA KSKMEQKMAL VKQRLALLDS ASSSSAEIDK DDDFVPMDDE  60
LTIVAAHQPI EIDYGDTYNE DEVLASKGLE SEKRRLPGQN ISASYGSVMD RAVEVQAKLP  120
PEHPSFVKRM LQSHVVRGFW LGLPTYFCNK HLPKEDTGIV LEDQNGQDHQ TLYLGVKQGL  180
SAGWRGFAIK HDIKVGDVVI FQLVRSTKFK VYIIRANEFT TADGAISLLN LEVHKKGKLS  240
KKGCFDDAKS REAEKASPVD DKVPAPQSDD NNAVVSEAID GLRISADSDM DFGDVTSFSN  300
FNIVVDSLVI DCKFHDHLRR TYYELCCSQK SFLHKNLLKQ LNLALVVGVI METISIAEGI  360
RACKAQAPSR EDLVIWKKTL ESLELLGMNV AFLLKRINDL LGLPAGARDL SECQKYKELK  420
SERAHAGEKV KVLELMLLNV KGVLQKMDAE MEEMESSVKR SGLMLQQLAT APW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2828021e-46JF282802.1 Panicum virgatum clone B01_PVCAG-2 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818274.10.0B3 domain-containing protein Os01g0234100-like isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2S3HZ840.0A0A2S3HZ84_9POAL; Uncharacterized protein
STRINGPavir.Eb00031.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-36B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]