PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01604.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 277aa    MW: 28723 Da    PI: 9.9523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01604.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-058099221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cgk+F+++  L  H+r
  Pahal.F01604.1 80 PCTECGKRFTSWKALFGHMR 99
                    5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.01479106IPR007087Zinc finger, C2H2
SMARTSM003550.004479101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.47E-880101No hitNo description
Gene3DG3DSA:3.30.160.608.5E-581101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-881103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576674.47E-8184211No hitNo description
SMARTSM003551.2189211IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-10189213IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369189211IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MATPVQPAAA PPPRPPPPHP HHDTTLTLAL ALPPPLPPPP FACALSPRPL QARRPRPDGV  60
ASSSTAFARV RSSPTGDTPP CTECGKRFTS WKALFGHMRC HPERQWRGIT PPPHFRHQHL  120
AVAAAAGDQF TVQEREIATS LLMLAGARPG GVKGKKSTLV PSSAKKESCS TPTPSPTAAA  180
PAPPRCDGHK CSVCARGFAT GQALGGHKRC HWERACAEGV AVAAPSSCST LATSGAAAVA  240
TTLDLNLPPP GTMPPLPRKI DEDGSLNAAL DLKLGF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822448.10.0zinc finger protein ZAT2-like
TrEMBLA0A2S3I3G10.0A0A2S3I3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb01832.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-30C2H2-like zinc finger protein