PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01609.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 499aa    MW: 54576.3 Da    PI: 10.9254
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01609.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.51.3e-30244341297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     ++ r+ws eDei++L +l++++ak+g    + +d++++++++++++ +++s++ql++KirrLK+K+k  v++ak+g++p++ +eh+++++elskk
  Pahal.F01609.1 244 RPPRVWSPEDEITILSALVEYRAKKGRlpASIQDTSKVHSQISGQLTANASTTQLSDKIRRLKHKYKLLVTRAKNGRDPDLPTEHERDVYELSKK 338
                     578************************777888************************************************************** PP

          DUF573  95 iWg 97 
                     +Wg
  Pahal.F01609.1 339 VWG 341
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-29246341IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAPKRPAAAA AADAPPGSGS DASDREAGDV RYTRRRRRNS PSPAPSRSRS RSRSRSPSRS  60
RSKTPPPNHR PNAVALSSTP TSAGADFAAA SDSDAGGRVS PPRRRDRKGP PRDRLDSDAD  120
ADASAGGRAP SPRRRGERSP SFHSDSDADA AGRVRSPRRN RERTPRLRSD SDSDNSLAAA  180
GSEDEGAGAG DASPLPRARR SSRIETSNIK PVSTRPMEVA RRASAGSSKR SSKRRHSSPE  240
QQKRPPRVWS PEDEITILSA LVEYRAKKGR LPASIQDTSK VHSQISGQLT ANASTTQLSD  300
KIRRLKHKYK LLVTRAKNGR DPDLPTEHER DVYELSKKVW GFKSGGVLGG SRAFEDAGDA  360
ESNEEQEIEE SDEGMENGWE RRERMSKKPK ASRFENGNGN ALAVVGRASH GNGSGKDDAD  420
KGKQTYPYLW EAVEELSKEH PSGPIFRKAF GVLEKSKARA MEEKLRTFRM SEIRQQLRRM  480
DLMKETVEMV LDALEGAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654RSRSRSRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821022.10.0serine/arginine repetitive matrix protein 1-like
TrEMBLA0A2S3I3C50.0A0A2S3I3C5_9POAL; Uncharacterized protein
STRINGSi013598m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-14DNA-binding storekeeper protein-related transcriptional regulator