PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01610.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 502aa MW: 54092.8 Da PI: 10.6317

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01610.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	91.3	1.1e-28	249	346	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +++r+ws eDe+++L +li+++ak+g +s+d+++++ ++ +++ +++s++ql++K+rrLK+K+k +vk+ak+ p++ +ehd++++elskk Pahal.F01610.1 249 RPSRVWSPEDELTILNALIEYRAKKGRlpGSSQDTSKLHLQIYGRLTANASTTQLSDKVRRLKHKYKLQVKRAKNRGVPDLPTEHDRSVYELSKK 343 678**********************888999********************************************************** PP DUF573 95 iWg 97 +W+ Pahal.F01610.1 344 VWR 346 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-27	251	345	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MAPTARSSAA AAAAGTGSGS DASDGEADAT RFYSRRRSSS PSPIPSRSRS RSKTPPPNLR 60 PSAAALSSTP TSAGADVAAA SDAAAASGGR APSPRRGDGK GPPGDHLYSD ADADAGNGTS 120 RRVPSPTRRG DRSPSFHSDS DADAAAGGGR VPSPRRNRER TPRLHSDSDN SVATANFTAT 180 TSEDDGGGAG DASPSRRPRL STPIKASNIK PIRTRPMDVT GHDAAPSSEL RSKRRHSPSE 240 RRTPEYQKRP SRVWSPEDEL TILNALIEYR AKKGRLPGSS QDTSKLHLQI YGRLTANAST 300 TQLSDKVRRL KHKYKLQVKR AKNRGVPDLP TEHDRSVYEL SKKVWRLKSL EGRSLAHEDT 360 GDAESNEEQG IKESDDDMDN GGEHRERTSK KPKISRFENG NGDATLTMGR ASHGDGSGRD 420 SAEKGKQMYP YLWAAVEELS KEHPSGPIFR KAFGLLEKSK ARAIEEKLRK FRMSVIRLQL 480 NRMDLTKLSV GMVLDALEGA Y*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MAPTARSSAA AAAAGTGSGS DASDGEADAT RFYSRRRSSS PSPIPSRSRS RSKTPPPNLR  60
PSAAALSSTP TSAGADVAAA SDAAAASGGR APSPRRGDGK GPPGDHLYSD ADADAGNGTS  120
RRVPSPTRRG DRSPSFHSDS DADAAAGGGR VPSPRRNRER TPRLHSDSDN SVATANFTAT  180
TSEDDGGGAG DASPSRRPRL STPIKASNIK PIRTRPMDVT GHDAAPSSEL RSKRRHSPSE  240
RRTPEYQKRP SRVWSPEDEL TILNALIEYR AKKGRLPGSS QDTSKLHLQI YGRLTANAST  300
TQLSDKVRRL KHKYKLQVKR AKNRGVPDLP TEHDRSVYEL SKKVWRLKSL EGRSLAHEDT  360
GDAESNEEQG IKESDDDMDN GGEHRERTSK KPKISRFENG NGDATLTMGR ASHGDGSGRD  420
SAEKGKQMYP YLWAAVEELS KEHPSGPIFR KAFGLLEKSK ARAIEEKLRK FRMSVIRLQL  480
NRMDLTKLSV GMVLDALEGA Y*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821021.1	0.0	serine/arginine repetitive matrix protein 1-like
TrEMBL	A0A2S3I358	0.0	A0A2S3I358_9POAL; Uncharacterized protein
STRING	Pavir.Fa00747.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	5e-12	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.F01610.1