PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01634.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 275aa    MW: 29441.8 Da    PI: 5.7654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01634.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21136185255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+ +++g
  Pahal.F01634.1 136 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAIEFRG 185
                     8********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-14136185IPR001471AP2/ERF domain
SMARTSM003805.2E-37136199IPR001471AP2/ERF domain
PROSITE profilePS5103224.935136193IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23136193IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-31136193IPR001471AP2/ERF domain
PRINTSPR003671.8E-11137148IPR001471AP2/ERF domain
CDDcd000181.02E-28139192No hitNo description
PRINTSPR003671.8E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTNRIFSAMA GNQAYMIRFD GHFDDPSPSS AGAEPPEVPP PPFVGRAISP EQEHQVIVAA  60
LLHVVSGYTT PPPEIFPAAS AACRVCGMER CLGCEFFGGE GSAVIALDDA KSNVAAAPGA  120
AAAAAGQRRR RKKKNKYRGV RQRPWGKWAA EIRDPRRAVR KWLGTFDTAE EAARAYDRAA  180
IEFRGPRAKL NFSFPEQAAG HGEASNGDAS AAAKSSDNTL SPSLCSGDAE EQGQPAEWPR  240
GGQETGEQLW EGLQGLMTLD ETELWFPPTS NAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20133192262ATERF1
3gcc_A5e-20133192262ATERF1
5wx9_A1e-191361921471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644531e-137EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821277.10.0ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ069e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2S3I3670.0A0A2S3I367_9POAL; Uncharacterized protein
STRINGSi014237m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-24redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]