PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01658.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 227aa MW: 24048.3 Da PI: 10.2466

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01658.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.5	1.3e-14	25	71	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+l+P+a +++Ka+ L ++v+Y+++L Pahal.F01658.1 25 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRYVREL 71 79***********************9.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.32E-12	20	72	No hit	No description
SuperFamily	SSF47459	6.67E-15	21	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.571	22	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	22	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-12	25	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-13	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVVTDGGVEG ERPAPAPAVR KERGRSHSEA ERKRRQRINA HLATLRTLVP SASRMDKAAL 60 LGEVVRYVRE LRGKASEAAE GVGAGVIPGE GDDVGVEEEE DDRWRPGGRR CGTGGLLGTG 120 AADGRLPPRR VRAWVCCADR PGLMADLGRA VRSVGNARPV RAEIATLDVC RDDDHVAAAA 180 TDKGGAVALS TLRAALRAVL LNREDHLAAA EGYKRPRFSA QIAKVK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	35	ERKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822447.1	1e-143	transcription factor AIG1-like
TrEMBL	A0A2T8IHC4	1e-141	A0A2T8IHC4_9POAL; Uncharacterized protein
STRING	Pavir.J25149.1.p	1e-104	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4114	35	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	1e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01658.1