PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01684.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 278aa    MW: 29246.3 Da    PI: 4.7547
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01684.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1953106356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++++q+++Le+ Fe ++++  e++++LA  lgL+ rqV vWFqNrRa++k
  Pahal.F01684.1  53 KKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWK 106
                     45689************************************************9 PP
2HD-ZIP_I/II132.41.6e-4252144193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls++qv++LE+sFe+e+kLeperK++la +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+ke
  Pahal.F01684.1  52 EKKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDTLLAEIKE 144
                     69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1943110IPR009057Homeodomain-like
PROSITE profilePS5007117.0748108IPR001356Homeobox domain
SMARTSM003897.9E-1851112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1952112IPR009057Homeodomain-like
CDDcd000868.78E-1853109No hitNo description
PfamPF000463.0E-1653106IPR001356Homeobox domain
PRINTSPR000312.6E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000312.6E-588104IPR000047Helix-turn-helix motif
PfamPF021831.2E-17108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKRPSGSVSG GGGGSPGLLP IVHSDDGFGG VGVEEADEDM VLCGGGGGGG GEKKRRLSTD  60
QVRALERSFE TENKLEPERK ARLALDLGLQ PRQVAVWFQN RRARWKTKQL ERDYAALRHS  120
YDALRADHDA LRRDKDTLLA EIKELKAKLG DEDAAASFSS VKEEPAASGV DPPAAAAQGS  180
SDSDSSGVVN DAEMMAAPEK ASHHPPAAAA ATAGAEAVVP GAALHHGEVF FHGHPLKVED  240
DEAAFLGDDD AACGGFFADL QPPPSLPWWT EPTEHWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783ERKARLA
2100108RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918720.0FP091872.1 Phyllostachys edulis cDNA clone: bphylf046i13, full insert sequence.
GenBankFP0923980.0FP092398.1 Phyllostachys edulis cDNA clone: bphylf024g13, full insert sequence.
GenBankFP0944210.0FP094421.1 Phyllostachys edulis cDNA clone: bphylf034o12, full insert sequence.
GenBankFP0957960.0FP095796.1 Phyllostachys edulis cDNA clone: bphylf053b02, full insert sequence.
GenBankFP0963140.0FP096314.1 Phyllostachys edulis cDNA clone: bphylf059i02, full insert sequence.
GenBankFP0972080.0FP097208.1 Phyllostachys edulis cDNA clone: bphylf060f04, full insert sequence.
GenBankFP0985540.0FP098554.1 Phyllostachys edulis cDNA clone: bphyst007g13, full insert sequence.
GenBankFP0999550.0FP099955.1 Phyllostachys edulis cDNA clone: bphyst012d13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822160.10.0homeobox-leucine zipper protein HOX20-like
SwissprotA2YWC01e-119HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-119HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2S3I3D90.0A0A2S3I3D9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D8P00.0A0A2T7D8P0_9POAL; Uncharacterized protein
STRINGPavir.Fa00633.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-39homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]