PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01696.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 330aa MW: 36747.6 Da PI: 4.8768

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01696.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.4	1.6e-17	27	113	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ e+ +Li+a+ e++++l+rg+lk+++Weev++ + ++r + +qC++k+e+l+kry+ ++++ s + +f++++ Pahal.F01696.1 27 WSEVETFHLIDAYDERWTALGRGQLKAQQWEEVAADVaarcaatPGVTVQRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFRRMD 113 ***********************************9999976444444459***************9998875......5899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-18	25	115	No hit	No description
SMART	SM00595	1.2E-4	34	120	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAAGAHDDAD EPPRRSALKK SAPAQPWSEV ETFHLIDAYD ERWTALGRGQ LKAQQWEEVA 60 ADVAARCAAT PGVTVQRKTG TQCRHKLEKL RKRYRTEAAR PVTSLWTFFR RMDQLERGPL 120 AVSSAYPPAA GSPTGAASDE EEEEEEEEEE EEEEEEEENE EEEEELVPRN NNTRSINGII 180 REFGSGLAPR HPQLQLQQPP SSITPSTAPP RKRVAYEAFQ AKAAAAAAAA VAADKAKEEE 240 VELFRRPSGR GGANAQLSAV LRDFSEGVMR LERRRMEMQW EIERGWQETE ARHAKMLQDA 300 QRQLRDTVAA SCALPPKKAR RDYGSSGDS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820374.1	0.0	uncharacterized protein LOC112896572
TrEMBL	A0A2S3I3D0	0.0	A0A2S3I3D0_9POAL; Uncharacterized protein
TrEMBL	A0A2T8IHE0	0.0	A0A2T8IHE0_9POAL; Uncharacterized protein
STRING	Pavir.J15698.1.p	1e-176	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-22	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01696.1