PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01712.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 218aa    MW: 23590.2 Da    PI: 9.3045
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01712.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.6e-12106156353
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                     e +r rr+ +NRe+ArrsR RK+ ++ eL   v  L + N++L +el++  
  Pahal.F01712.1 106 EERRRRRMVSNRESARRSRMRKQRQLSELWAQVSHLRGANRRLLDELNRAL 156
                     67899******************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-9103155No hitNo description
SMARTSM003381.3E-9104175IPR004827Basic-leucine zipper domain
PfamPF001704.3E-9105154IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.427106176IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-10108155No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
CDDcd147021.36E-12115157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYHHFHGEVA SLRLLSPPNA SFAAHHHMNM ALPPQAYFPP SFEPASAFQD AASLLAGDVA  60
SFELDTVFRE AAHLAGRNGS PSSGSGSDGA AGSGYPMNTV AVAAEEERRR RRMVSNRESA  120
RRSRMRKQRQ LSELWAQVSH LRGANRRLLD ELNRALRGCA DARRESARLR NEKAELAKKL  180
EQLLQSATAT EKGAAAASSD RSCSSEPCNN TSADTSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120127RRSRMRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766324e-97EU976632.1 Zea mays clone 985663 bZIP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821559.11e-156bZIP transcription factor 2-like
TrEMBLA0A2S3I3E91e-155A0A2S3I3E9_9POAL; Uncharacterized protein
STRINGSi014433m5e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.12e-08basic leucine-zipper 58