PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01720.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 209aa    MW: 23540.6 Da    PI: 10.0755
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047179199222
                     EETTTTEEESSHHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                      C++C+  +++ s+L++H+r 
  Pahal.F01720.1 179 NCSICKANCTSESDLESHLRG 199
                     6******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.84E-65199No hitNo description
SMARTSM004510.0326296IPR003604Zinc finger, U1-type
SMARTSM003551106589IPR015880Zinc finger, C2H2-like
PfamPF128740.00116586No hitNo description
SMARTSM004510.52123155IPR003604Zinc finger, U1-type
SMARTSM00355110127148IPR015880Zinc finger, C2H2-like
PfamPF128743.9E-6127148No hitNo description
SuperFamilySSF576675.21E-6127155No hitNo description
SuperFamilySSF576672.92E-10165207No hitNo description
SMARTSM004510.017175207IPR003604Zinc finger, U1-type
SMARTSM003550.2178202IPR015880Zinc finger, C2H2-like
PfamPF128743.1E-9178202No hitNo description
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
LELTALPHHD TSPVQQGAQL HRHIPVLPEP LLGRARIPKK KFSGLKRKTT AETSTSNKKR  60
SSGKWICALC HVNTYSEVSF KEHCAGFPHQ SNVAELEWAK EAAEPKRMAT AEANHGVQHN  120
PTARNFSICQ VKCSSELDLN NHLKGRRHQK NTLVLRRESK ETEWQSGFRE AELPVSRWNC  180
SICKANCTSE SDLESHLRGR RHQQTVKA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973557.11e-103uncharacterized protein LOC101786502
TrEMBLA0A3L6PR451e-114A0A3L6PR45_PANMI; Uncharacterized protein
STRINGPavir.Fa00911.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1416655