PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01824.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 331aa    MW: 35666.6 Da    PI: 8.4749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01824.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-191060256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+G+r+++ +g+W+AeIrdp++     r++lg++ t+e+Aa+a++a ++k++g+
  Pahal.F01824.1 10 PYRGIRRRP-WGKWAAEIRDPKK---GVRVWLGTYKTPEDAARAYDAEARKIRGN 60
                    59*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-351073IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-211068IPR016177DNA-binding domain
PROSITE profilePS5103223.1171067IPR001471AP2/ERF domain
PfamPF008472.6E-111159IPR001471AP2/ERF domain
PRINTSPR003671.7E-101122IPR001471AP2/ERF domain
CDDcd000185.72E-311166No hitNo description
Gene3DG3DSA:3.30.730.101.4E-301169IPR001471AP2/ERF domain
PRINTSPR003671.7E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKPKQKRKNP YRGIRRRPWG KWAAEIRDPK KGVRVWLGTY KTPEDAARAY DAEARKIRGN  60
KAKVNFHDEA PPNIMTNIPE PIVTVMPPML VSAEKFNTNA PVRHANNSNE DLFSVVNFSG  120
NNARSVPNEG FGLLSMNVPN VPSAPYEISR MEVCPNQNIF SACSSSNGLV NFSANNASSI  180
GTEGSGLLSM KMPHAPSVIP TMGHCPSQNK FSVGSSSNGS GNDAIKNLNA CSSLPHLGMP  240
MFSQCTFAGP PMMIERNVGT LVPTLSNAAP IVPFGVASVD AGIKVIDQQP ILQVVENESI  300
PSNLQGDVSE DVAAEITMWD FYDQLLAKAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-201166359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822438.10.0uncharacterized protein LOC112898303
TrEMBLA0A2S3I2E80.0A0A2S3I2E8_9POAL; Uncharacterized protein
STRINGPavir.Fb01507.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-24ERF family protein