PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01833.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 216aa    MW: 23274.9 Da    PI: 4.9211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01833.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEde l +av+++G ++W++Ia  +  gR +k+c++rw ++l
   Pahal.F01833.1 15 KTPWTAEEDEALRRAVREHGRRNWAAIAGAVAGGRGAKSCRLRWCQHL 62
                     579***************************999***********9986 PP
2Myb_DNA-binding49.11.3e-1570111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+eEd ++++  + +G++ W+tIar++  gR+++ +k+rw++
   Pahal.F01833.1  70 PFTPEEDARIIEQQRVHGNK-WATIARYLH-GRSDNAVKNRWNS 111
                      89******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6411066IPR017930Myb domain
SuperFamilySSF466891.72E-2913109IPR009057Homeodomain-like
SMARTSM007174.9E-161464IPR001005SANT/Myb domain
PfamPF002492.5E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-221769IPR009057Homeodomain-like
SMARTSM007172.3E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129418.93369117IPR017930Myb domain
PfamPF002493.6E-1370111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2170115IPR009057Homeodomain-like
CDDcd001671.04E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAAECGGEGK ADCRKTPWTA EEDEALRRAV REHGRRNWAA IAGAVAGGRG AKSCRLRWCQ  60
HLAPELDSRP FTPEEDARII EQQRVHGNKW ATIARYLHGR SDNAVKNRWN SALRKAQQGN  120
PAAAAAQEDD DDAAEDQAAA PACLDLFPLM AGEMREVNAA DRLGVREEEA VEEDAASIDL  180
TLGSPGLSDA ELALSLGPAR PPPNRGEAVS FRLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2791151106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822537.11e-153transcription factor MYB77-like
SwissprotQ9SN122e-41MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A2S3I2Z61e-152A0A2S3I2Z6_9POAL; Uncharacterized protein
STRINGPavir.Fb01519.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-35myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]