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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pahal.F01861.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 79aa MW: 9021.98 Da PI: 12.0901 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 13.2 | 0.00017 | 30 | 63 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ eL++++P + +K + ++L+++ eYI+ L+
Pahal.F01861.1 30 RLRELKKIVPVG---TRRKADVDAVLRQTAEYICALE 63
6889*******9...9*****************9985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 2.8E-4 | 30 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.83E-5 | 30 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 79 aa Download sequence Send to blast |
MVTQGKTIKI SRGMVSLRRR KPFQLMVLRR LRELKKIVPV GTRRKADVDA VLRQTAEYIC 60 ALELKVAILR RLSNIYGV* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008664631.1 | 2e-35 | uncharacterized protein LOC100277208 | ||||
| TrEMBL | A0A2S3I337 | 4e-47 | A0A2S3I337_9POAL; Uncharacterized protein | ||||
| STRING | Pavir.Fa00829.1.p | 4e-44 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5688 | 5 | 6 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Pahal.F01861.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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